Eric Banks e93ff3ea6e Let's go back to having the SB/SLOD NOT computed by default. If you recall, it was only enabled by default because we thought we were going to use it when we made VQSR use random forests. But since we decided not to change VQSR, there's no reason to triple the computation for every variant site anymore.		2012-10-25 12:45:23 -04:00
..
commandline	Refactored argument matching to support other plugins in addition to file lists.	2012-10-15 15:10:45 -04:00
gatk	Let's go back to having the SB/SLOD NOT computed by default. If you recall, it was only enabled by default because we thought we were going to use it when we made VQSR use random forests. But since we decided not to change VQSR, there's no reason to triple the computation for every variant site anymore.	2012-10-25 12:45:23 -04:00
jna	Updated hard limit MathUtils.MAXN number of samples from 11,000 to 50,000.	2012-05-29 11:18:22 -04:00
utils	Add more exhaustive unit tests for input errors to NanoScheduler	2012-10-23 20:11:29 -04:00
BaseTest.java	Extensive unit tests, contacts, and documentation for RecalDatum	2012-07-31 08:11:03 -04:00
MD5DB.java	Finalizing BCF2 mark III commit	2012-06-21 15:16:27 -04:00
MD5Mismatch.java	Final updates to integration tests for BCF2	2012-05-24 10:58:59 -04:00
StingTextReporter.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
WalkerTest.java	Renaming -cnt to -nct for consistency	2012-09-05 21:13:19 -04:00