aaron e8b8ab5985 Added code to extend Matt's getReferenceBases out to the read walkers, so they can see the corresponding reference for each read. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@652 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-11 03:42:38 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Added code to extend Matt's getReferenceBases out to the read walkers, so they can see the corresponding reference for each read.	2009-05-11 03:42:38 +00:00
test/org/broadinstitute/sting	my move ended up being a copy, so this is to delete dupplicate files.	2009-05-11 02:10:26 +00:00