gatk3的最后一个经典版本3.8

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Ernesto Brau e8b42c4dfd Use GKL's implementation of Vector Logless Pair HMM Fixed MuTect2 tests by removing old -alwaysloadVectorHmm flag; upgraded to GKL 0.5.2; FASTEST_AVAILABLE pairhmm option; improved documenting comments in code Made FASTEST_AVAIALABLE the default for the pairHMM cmdline argument Make LOGLESS_CACHING the default pairHMM unified cmdline argument, fix error message if choose an unrecognized pairHMM Updae MD5s		2017-06-07 13:33:32 -04:00
.github	Add "GATK4 Implications" section to GATK3 pull request template	2016-05-06 13:39:47 -04:00
licensing	Update licenses	2016-03-05 01:09:43 -08:00
protected	Use GKL's implementation of Vector Logless Pair HMM	2017-06-07 13:33:32 -04:00
public	Use GKL's implementation of Vector Logless Pair HMM	2017-06-07 13:33:32 -04:00
settings/helpTemplates	Documentation fixes	2016-12-05 14:09:44 -05:00
.gitignore	Added issue and pull request templates	2016-04-04 13:27:45 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.8 development	2016-12-12 08:53:23 -05:00

The Genome Analysis Toolkit