Mark DePristo e892489696 V2 of the document system. ... Now uses GATKDoc class to organize documentation for arguments. Arguments now listed by feature (required, optional, hidden, etc) and link to detailed information about the argument in the html Lots of code moving between Class and ClassDoc objects. Should be refactored into a single static utility class.		2011-07-21 15:20:34 -04:00
..
R	Moving AnalyzeAnnotations into the archive because it has outlived its usefulness.	2011-07-02 10:39:53 -04:00
c	BWA bindings and tests moved to public (was required for ValidationAmplicons)	2011-07-19 20:11:31 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	V2 of the document system.	2011-07-21 15:20:34 -04:00
packages	Revert "Merge branch 'master' of ssh://gsa1/humgen/gsa-scr1/gsa-engineering/git/unstable"	2011-07-19 18:38:53 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Revert "Merge branch 'master' of ssh://gsa1/humgen/gsa-scr1/gsa-engineering/git/unstable"	2011-07-19 18:38:53 -04:00
testdata	Testdata for diffObjects.	2011-07-18 10:47:03 -04:00