hanna e7f44ada98 Make unpackList public static so that Doug can use it in the scatter/gather framework. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1665 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-21 15:32:49 +00:00
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alignment	Time for a reorganization. Repackage generally useful alignment classes lower in the package structure, and create a subpackage for bwa-specific code. Repackage BWA alignment code away from BWT representation. Isolate byte- and word-packing streams in another package that will ultimately be killed off en masse.	2009-09-17 23:28:47 +00:00
gatk	Make unpackList public static so that Doug can use it in the scatter/gather framework.	2009-09-21 15:32:49 +00:00
playground	little fixes; also fixed a tyPo	2009-09-18 22:38:51 +00:00
secondarybase	Cleanup...deprecate FastaSequenceFile2 in favor of IndexedFastaSequenceFile or ReferenceSequenceFile from Picard, depending on the application.	2009-07-08 18:49:08 +00:00
utils	Update gsadevelopers -> gsahelp.	2009-09-20 23:36:54 +00:00