Mark DePristo 209dd64268 HaplotypeCaller now emits per-sample DP ... -- Created a new annotation DepthPerSampleHC that is by default on in the HaplotypeCaller -- The depth for the HC is the sum of the informative alleles at this site. It's not perfect (as we cannot differentiate between reads that align over the event but aren't informative vs. those that aren't even close) but it's a pretty good proxy and it matches with the AD field (i.e., sum(AD) = DP). -- Update MD5s -- delivers [#48240601]		2013-06-06 09:47:32 -04:00
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java	HaplotypeCaller now emits per-sample DP	2013-06-06 09:47:32 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00