Karthik Gururaj 733a84e4f9 Added support to transfer haplotypes once per region to the JNI ... Re-use transferred haplotypes (stored in GlobalRef) across calls to computeLikelihoods		2014-01-22 10:52:41 -08:00
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net/sf/samtools	Delete unused FastaSequenceIndexBuilder class and accompanying test	2013-05-01 01:02:01 -04:00
org/broadinstitute/sting	Added support to transfer haplotypes once per region to the JNI	2014-01-22 10:52:41 -08:00