mghodrat e7598dde8b Clean up		2014-01-26 11:36:06 -08:00
..
.gitignore	Deleted libJNILoglessPairHMM.so from git tracking	2014-01-21 15:01:09 -08:00
JNI_README	Same log message as before - forgot -a option	2014-01-16 21:40:04 -08:00
LoadTimeInitializer.cc	1. Converted q,i,d,c in C++ from int* to char*	2014-01-22 22:57:32 -08:00
LoadTimeInitializer.h	1. Converted q,i,d,c in C++ from int* to char*	2014-01-22 22:57:32 -08:00
Makefile	1. Converted q,i,d,c in C++ from int* to char*	2014-01-22 22:57:32 -08:00
avx_function_instantiations.cc	Clean up	2014-01-26 11:36:06 -08:00
baseline.cc	Clean up	2014-01-26 11:36:06 -08:00
define-double.h	Clean up	2014-01-26 11:36:06 -08:00
define-float.h	Clean up	2014-01-26 11:36:06 -08:00
define-sse-double.h	Clean up	2014-01-26 11:36:06 -08:00
define-sse-float.h	Clean up	2014-01-26 11:36:06 -08:00
headers.h	1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the	2014-01-20 08:03:42 -08:00
org_broadinstitute_sting_utils_pairhmm_JNILoglessPairHMM.cc	Clean up	2014-01-26 11:36:06 -08:00
org_broadinstitute_sting_utils_pairhmm_JNILoglessPairHMM.h	Added support to transfer haplotypes once per region to the JNI	2014-01-22 10:52:41 -08:00
pairhmm-1-base.cc	1. Converted q,i,d,c in C++ from int* to char*	2014-01-22 22:57:32 -08:00
pairhmm-template-kernel.cc	Clean up	2014-01-26 11:36:06 -08:00
pairhmm-template-main.cc	Clean up	2014-01-26 11:36:06 -08:00
run.sh	1. Converted q,i,d,c in C++ from int* to char*	2014-01-22 22:57:32 -08:00
shift_template.c	Clean up	2014-01-26 11:36:06 -08:00
sse_function_instantiations.cc	Clean up	2014-01-26 11:36:06 -08:00
template.h	Clean up	2014-01-26 11:36:06 -08:00
utils.cc	Clean up	2014-01-26 11:36:06 -08:00
utils.h	1. Converted q,i,d,c in C++ from int* to char*	2014-01-22 22:57:32 -08:00
vector_defs.h	Clean up	2014-01-26 11:36:06 -08:00
vector_function_prototypes.h	Clean up	2014-01-26 11:36:06 -08:00