Mark DePristo e73406b9b5 CountReadsInActiveRegions now emits a detailed GATK report ... -- This report details which intervals are coming in and how many reads they contain -- Added integration test to verify that the intervals aren't changing, before heading into the ART refactor		2012-03-14 17:26:37 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Add option in ValidationAmplicons to only output SNPs and INDELs, ignoring complex variants (or SVs, etc.)	2012-03-14 14:26:40 -04:00
test	CountReadsInActiveRegions now emits a detailed GATK report	2012-03-14 17:26:37 -04:00