ebanks 5dbba6711c Lots of changes: (I'll send email out in a sec) ... 1) Moved various disparate concordance / set splitting functionalities to a new parent tool which works like VariantFiltration (i.e. people can write various modules that fit inside and can be run though it). 2) Fixed up argument parsing in VariantFiltration to use key=value format so we don't accidentally mox up values (like I had been doing). 3) Have indel rod print samples git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1540 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-07 01:12:09 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Lots of changes: (I'll send email out in a sec)	2009-09-07 01:12:09 +00:00
test/org/broadinstitute/sting	Improvements to the CountCovariates and TableRecablirator, as well as regression tests for SLX and 454 data	2009-09-04 22:26:57 +00:00