hanna 4c147329a9 Turn javadoc comments for packages and classes into key/value pairs in a properties file. Embed the properties file ... in GenomeAnalysisTK.jar. Still no support for actually displaying the archived javadoc. Also change the approach to providing package javadocs: retired the deprecated package.html file in favor of Java1.5-style package-info.java. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2263 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-04 20:08:41 +00:00
..
TraversalEngine.java	cleanup of the traversal output code	2009-11-12 06:18:10 +00:00
TraversalStatistics.java	Fixes for including duplicate reads in the locus traversal; now checks that the ref arg is provided when needed	2009-04-17 01:27:36 +00:00
TraverseDuplicates.java	cleanup of the traversal output code	2009-11-12 06:18:10 +00:00
TraverseLoci.java	cleanup of the traversal output code	2009-11-12 06:18:10 +00:00
TraverseLocusWindows.java	ReadBackedPileup in all its glory. Documented, aligned with the output of LocusIteratorByState, and caching common outputs for performance	2009-11-25 20:54:44 +00:00
TraverseReads.java	cleanup of the traversal output code	2009-11-12 06:18:10 +00:00
package-info.java	Turn javadoc comments for packages and classes into key/value pairs in a properties file. Embed the properties file	2009-12-04 20:08:41 +00:00