gatk3的最后一个经典版本3.8

Eric Banks e6f468b647 Refactored the quasi-useful IndelType annotation into the more useful VariantType. ... The indels are still annotated as before, but now all other variant types are annotated too. I'm doing this because of requests on the forum but am not making it standard. If we find it to be useful we can turn it on by default later.		2012-12-17 11:54:47 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Changing the HC over to using the non-contamination-downsampled read maps for the purposes of annotations. This behavior now matches the UG. There is a new command line option to go back to the older behavior to explore the differences.	2012-12-17 11:27:44 -05:00
public	Refactored the quasi-useful IndelType annotation into the more useful VariantType.	2012-12-17 11:54:47 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Refactored entire NA12878KB to allow us to easily build a na12878kb.jar for IGV integration	2012-11-29 14:38:09 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Use build jars in test classpaths by default	2012-11-28 22:57:04 -05:00