gatk-3.8/java
hanna e6d61197e6 Disable OTF indexing when writing indices for temporary VCFs when running
with -nt option.  When last I checked in, Ryan was seeing a ~25% speedup 
per shard by not indexing.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4556 348d0f76-0448-11de-a6fe-93d51630548a
2010-10-22 17:40:37 +00:00
..
config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src Disable OTF indexing when writing indices for temporary VCFs when running 2010-10-22 17:40:37 +00:00
test Fixed Integration Tests to output VCF files with -NO_HEADER 2010-10-21 19:49:44 +00:00