Matt Hanna e63d9d8f8e Mauricio pointed out to me that dynamic merging the unmapped regions of multiple BAMs ('-L unmapped' with a BAM list) ... was completely broken. Sorry about this! Fixed.		2011-09-12 21:50:59 -04:00
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R	Moved gsalib sources from private/ to public/	2011-07-27 12:29:43 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Mauricio pointed out to me that dynamic merging the unmapped regions of multiple BAMs ('-L unmapped' with a BAM list)	2011-09-12 21:50:59 -04:00
packages	Added edu.mit.broad.picard to Queue packaged jar.	2011-07-23 14:40:29 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Fixed typo when printing the contents or last N lines of a file. Thanks to larryns.	2011-09-09 01:33:25 -04:00
testdata	Testdata for diffObjects.	2011-07-18 10:47:03 -04:00