kshakir 475ad1259d Put a band-aid on the FCP by switching use of DINDEL to INDEL and explicitly running UG the old way with just indels and just snps. ... Switched YAML parser to new Broad parser which will additionally update picard cleaned bams to the latest version if the project and sample are specified. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5634 348d0f76-0448-11de-a6fe-93d51630548a		2011-04-14 02:22:31 +00:00
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examples	Enabled the parameterize option for debugging PipelineTest MD5s.	2011-03-26 00:41:47 +00:00
playground	Put a band-aid on the FCP by switching use of DINDEL to INDEL and explicitly running UG the old way with just indels and just snps.	2011-04-14 02:22:31 +00:00
IPFLibraryPipelineTest.scala	Renamed the IPFL Test to IPFL PipelineTest so that it'll be picked up by the PipelineTests.	2011-02-05 00:06:12 +00:00
PipelineTest.scala	Enabled the parameterize option for debugging PipelineTest MD5s.	2011-03-26 00:41:47 +00:00
PipelineTestEvalSpec.scala	Moved MD5 utils from WalkerTest to BaseTest for use by PipelineTests.	2011-01-25 04:11:49 +00:00
PipelineTestSpec.scala	Enabled the parameterize option for debugging PipelineTest MD5s.	2011-03-26 00:41:47 +00:00