chartl 8125b8b901 Old changes to the exome VQSR search. ... SGA updated to include new proportion-based insert size test. Major fix for dichotomization test: MathUtils now optionally ignores NaN values for sums, averages, variances. In the future this feature can be pushed back into the AssociationContext object iself (e.g. no data? no entry), but it's kept like this for transparency for now. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5618 348d0f76-0448-11de-a6fe-93d51630548a		2011-04-12 23:00:50 +00:00
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old	Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output.	2011-03-24 14:03:51 +00:00
BootstrapCalls.q	Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output.	2011-03-24 14:03:51 +00:00
Exome_VQSR_FullSearch.q	Old changes to the exome VQSR search.	2011-04-12 23:00:50 +00:00
RefineGenotypesAndMerge.q	Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output.	2011-03-24 14:03:51 +00:00
ScatterGatherAssociation.q	Old changes to the exome VQSR search.	2011-04-12 23:00:50 +00:00
expanded_targets.q	Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output.	2011-03-24 14:03:51 +00:00
fullCallingPipelineV2.q	Refactoring the qscript directory; oneoffs, playground, and core	2011-01-19 15:23:40 +00:00
omni_qc.q	Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output.	2011-03-24 14:03:51 +00:00
private_mutations.q	Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output.	2011-03-24 14:03:51 +00:00