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arguments
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A significant refactoring of the ROD system, done largely to simplify the process of
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2010-12-31 04:52:22 +00:00 |
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contexts/variantcontext
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Remove the extra trailing tab at the end of the VCF ## header line. Unfortunately, this meant updating every freaking integration test.
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2010-12-08 17:22:29 +00:00 |
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datasources
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Rewrite of GATKBAMIndex to avoid mmaps causing false reports of heavy memory
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2011-04-12 23:49:58 +00:00 |
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executive
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Changing testing framework from junit -> testng, for its enhanced configurability.
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2010-11-01 21:31:44 +00:00 |
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filters
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Convert GenomeLocParser into an instance variable. This change is required
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2010-11-10 17:59:50 +00:00 |
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iterators
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More descriptive error when VerifyingSamIterator hits an inconsistent alignment. Also updated
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2011-03-03 03:55:24 +00:00 |
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refdata
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Oops...forgot to commit the changes that allow primitive VCF streaming.
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2011-01-12 21:54:51 +00:00 |
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traversals
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A few minor modifications masquerading as significant changes according to
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2011-02-03 17:59:19 +00:00 |
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walkers
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VariantsToTable now blows up by default if you ask for a field that isn't present in a record.
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2011-04-14 14:42:43 +00:00 |
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CommandLineExecutableUnitTest.java
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Fix for bug GSA-441: BAM file list with blank lines gives a confusing error
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2011-04-01 15:04:35 +00:00 |
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GenomeAnalysisEngineUnitTest.java
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Small correction to the unit test code from my last commit.
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2011-04-04 18:55:38 +00:00 |
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WalkerManagerUnitTest.java
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Changing testing framework from junit -> testng, for its enhanced configurability.
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2010-11-01 21:31:44 +00:00 |
8ed9c0f518