carneiro e5cfc6ae74 NA12878 hg19 dataset was included to the methods pipeline. (and I am running it) ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5217 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-08 16:17:46 +00:00
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ASHGcalling.scala	Refactoring the qscript directory; oneoffs, playground, and core	2011-01-19 15:23:40 +00:00
MethodsDevelopmentCallingPipeline.scala	NA12878 hg19 dataset was included to the methods pipeline. (and I am running it)	2011-02-08 16:17:46 +00:00
Phase1Calling.scala	Moving Phase1Calling qscript over to using the cleaned, pre-BAQed bams	2011-01-21 02:41:20 +00:00
Phase1Cleaning.scala	Always best to use the left-aligned version of the dbsnp vcf	2011-01-26 20:21:50 +00:00
VQSR_parameterSearch.scala	Another relevant qscript. I use this one to do thousands of variant recalibration jobs to search for optimal parameters.	2011-01-19 18:17:32 +00:00
variantRecalibrator.scala	Refactoring the qscript directory; oneoffs, playground, and core	2011-01-19 15:23:40 +00:00