gatk3的最后一个经典版本3.8

Ryan Poplin e58d0a71e4 Merge pull request #129 from broadinstitute/md_hc_good_head_tail ... Many more improvements and bugfixes to the HaplotypeCaller		2013-03-27 12:36:39 -07:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Updating md5s due to changes in assembly graph creation algorithms and default parameter	2013-03-27 15:31:24 -04:00
public	Display the active MappingQualityFilter if mmq > 0 in the HaplotypeCaller	2013-03-26 14:27:18 -04:00
settings	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Fix tests that were consistently or intermittently failing when run in parallel on the farm	2013-03-06 13:56:54 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00