gatk-3.8/public/java/src/org/broadinstitute/sting/commandline
Eric Banks ec4b30de6d Patch from Laurent: typo leads to bad error messages. 2011-09-12 14:45:53 -04:00
..
Advanced.java Usability improvements to GATKDocs 2011-08-18 21:39:11 -04:00
Argument.java Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes. 2011-07-17 20:29:58 -04:00
ArgumentCollection.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
ArgumentDefinition.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
ArgumentDefinitionGroup.java Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes. 2011-07-17 20:29:58 -04:00
ArgumentDefinitions.java Fix improper detection of command-line arguments with missing values. 2011-07-25 13:20:00 -04:00
ArgumentException.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
ArgumentIOType.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
ArgumentMatch.java Fix improper detection of command-line arguments with missing values. 2011-07-25 13:20:00 -04:00
ArgumentMatches.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
ArgumentSource.java ArgumentSource no longer comparable. Arguments sorted by GATKDoclet 2011-08-18 22:20:14 -04:00
ArgumentTypeDescriptor.java Patch from Laurent: typo leads to bad error messages. 2011-09-12 14:45:53 -04:00
ClassType.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
CommandLineProgram.java Completely hacked together version of a FreeMarker + javadoc + custom doclet walker documentation generator 2011-07-21 00:18:07 -04:00
CommandLineUtils.java Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes. 2011-07-17 20:29:58 -04:00
EnumerationArgumentDefault.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
Gather.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
Gatherer.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
Hidden.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
Input.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
MissingArgumentValueException.java Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes. 2011-07-17 20:29:58 -04:00
Output.java Minor doc fixes 2011-08-16 12:55:45 -04:00
ParsingEngine.java Bug fixes 2011-08-18 21:58:36 -04:00
ParsingMethod.java Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes. 2011-07-17 20:29:58 -04:00
RodBinding.java makeUnbound now package protected 2011-08-10 22:29:32 -04:00
Tags.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
package-info.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00