David Roazen 639030bd6d Enable convenient display of diff engine output in Bamboo, plus misc. minor test-related improvements ... -Diff engine output is now included in the actual exception message thrown as a result of an MD5 mismatch, which allows it to be conveniently viewed on the main page of a build in Bamboo. Minor Additional Improvements: -WalkerTestSpec now auto-detects test class name via new JVMUtils.getCallingClass() method, and the test class name is now included as a regular part of integration test output for each test. -Fix race condition in MD5DB.ensureMd5DbDirectory() -integrationtests dir is now cleaned by "ant clean" GSA-915 #resolve		2013-05-10 19:00:33 -04:00
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qscript/org/broadinstitute/sting/queue/qscripts	Now that we don't generate dict and fai files, the resource script needs to copy them to the bundle.	2013-05-02 15:18:13 -04:00
src/org/broadinstitute/sting/queue	Small Queue/scala improvements, and commiting pipeline scripts developed for ancient DNA processing for posterity:	2013-04-08 11:52:13 -04:00
test/org/broadinstitute/sting/queue	Enable convenient display of diff engine output in Bamboo, plus misc. minor test-related improvements	2013-05-10 19:00:33 -04:00