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gatk-3.8/public/java/test/org/broadinstitute/sting/gatk/traversals
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Mark DePristo 1c03ebc82d Implement ActiveRegionTraversal RefMetaDataTracker for map call; HaplotypeCaller now annotates ID from dbSNP 
-- Reuse infrastructure for RODs for reads to implement general IntervalReferenceOrderedView so that both TraverseReads and TraverseActiveRegions can use the same underlying infrastructure
-- TraverseActiveRegions now provides a meaningful RefMetaDataTracker to ActiveRegionWalker.map
-- Cleanup misc. code as it came up
-- Resolves GSA-808: Write general utility code to do rsID allele matching, hook up to UG and HC
 		2013-06-10 16:20:31 -04:00
..
DummyActiveRegionWalker.java Working version of incremental active region traversals 2013-01-23 13:46:00 -05:00
TAROrderedReadCacheUnitTest.java Make ActiveRegionTraversal robust to excessive coverage 2013-04-08 15:48:19 -04:00
TraverseActiveRegionsUnitTest.java Implement ActiveRegionTraversal RefMetaDataTracker for map call; HaplotypeCaller now annotates ID from dbSNP 2013-06-10 16:20:31 -04:00
TraverseDuplicatesUnitTest.java Cleanup ART 2013-01-11 15:17:17 -05:00
TraverseReadsUnitTest.java Implement ActiveRegionTraversal RefMetaDataTracker for map call; HaplotypeCaller now annotates ID from dbSNP 2013-06-10 16:20:31 -04:00