Mark DePristo 03741fb640 Merge branch 'master' into rodRefactor ... Conflicts: public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotatorEngine.java public/java/test/org/broadinstitute/sting/gatk/walkers/indels/IndelRealignerIntegrationTest.java public/java/test/org/broadinstitute/sting/gatk/walkers/indels/IndelRealignerPerformanceTest.java public/java/test/org/broadinstitute/sting/utils/variantcontext/VariantContextIntegrationTest.java		2011-08-02 14:21:58 -04:00
..
qscript/org/broadinstitute/sting/queue/qscripts	Remove temporary index files (*.bai)	2011-07-30 02:05:22 -04:00
src/org/broadinstitute/sting/queue	Updated to reflect new parse() function	2011-07-30 15:34:20 -04:00
test/org/broadinstitute/sting/queue	Memory limits changed from Int to Double.	2011-07-21 22:57:18 -04:00