gatk-3.8/java
ebanks e495b836d3 - added mapping quality filter
- make the filters brainless in that they strictly have thresholds and filter based on them; require user to calculate and input these thresholds.
- update filters in preparation for migration to new output format



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1363 348d0f76-0448-11de-a6fe-93d51630548a
2009-08-03 16:46:51 +00:00
..
config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting - added mapping quality filter 2009-08-03 16:46:51 +00:00
test/org/broadinstitute/sting Tests for downsampling related utilities in ListUtils class that didn't get checked in earlier 2009-07-31 00:09:35 +00:00