carneiro 87e19a17ae small updates to the variant eval part of the pipeline, some updates to the pacbio specific pipeline. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5244 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-15 16:19:07 +00:00
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core	small updates to the variant eval part of the pipeline, some updates to the pacbio specific pipeline.	2011-02-15 16:19:07 +00:00
examples	Moved the maximum number of intervals check from FCP to the Queue core so that scatter gather will no longer blow up if you specify a scatter count that is too high.	2011-01-28 23:33:58 +00:00
lib	Thanks to mark: VCFInfoToTable removed in favor of a more flexible walker. Slight change to the argument structure of the walker to make it play more nicely with Queue: the field list parsing is pushed into the command line system (e.g. the variable is exposed as a List<String> and not a String, so Queue doesn't have to join a list into a string only to have it broken out again. This also allows the user to specify -F field1 -F field2 -F field3 if he/she so desires.	2010-12-15 03:33:36 +00:00
oneoffs	small updates to the variant eval part of the pipeline, some updates to the pacbio specific pipeline.	2011-02-15 16:19:07 +00:00
playground	Major revision of the batch merge script. All sites are now used, hooks for some UG settings, no longer reliant on the pipeline management library (pipeline libs are probably going to go away -- nobody uses them)	2011-02-14 23:52:05 +00:00