fromer d6e3f2eba6 Added GC content calculator for CNV data ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5240 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-14 22:29:55 +00:00
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alignment	Fixed Umapped misspelling	2011-02-04 22:21:41 +00:00
analyzecovariates	Change to support plotting of indel quality as a function of covariates - for now, just call different R calling script.	2011-01-22 14:09:23 +00:00
commandline	<key>=<value> tagging support for command-line arguments. Unfortunately, still	2011-01-21 00:22:42 +00:00
datasources/pipeline	Removed deprecated getDbsnpFile.	2011-02-08 21:12:15 +00:00
gatk	Another change in variant classification values	2011-02-14 17:47:58 +00:00
jna	After code review with APSG, trying a patch for SIGSEGV errors which checks the LSF result codes from lsb_openjobinfo instead of checking for a null return value from lsb_readjobinfo.	2011-02-08 21:08:22 +00:00
oneoffprojects	Added GC content calculator for CNV data	2011-02-14 22:29:55 +00:00
playground	Another change in variant classification values	2011-02-14 17:47:58 +00:00
queue	Updated the Queue GATK generator and packaging to include more dependencies for fullCallingPipeline.q.	2010-11-30 15:29:40 +00:00
utils	Refactoring of indel evaluation code to make it easier for external functions to get access to indel classification, in preparation for IndelMetricsByAC to stratify indel classes by AC (not done yet).	2011-02-08 17:35:16 +00:00