gatk3的最后一个经典版本3.8

Mark DePristo e445c71161 LIBS optimization for adapter clipping ... -- GATKSAMRecords now cache the result of the getAdapterBoundary, allowing us to avoid repeating a lot of work in LIBS -- Added unittests to cover adapter clipping		2013-01-25 16:05:17 -05:00
licensing	Refrain from pushing symlinks into the repo... not all filesystems treat it correctly	2013-01-22 15:18:19 -07:00
protected/java	Updating HC md5s for new cutting algorithm and default band pass filter parameters	2013-01-25 11:07:29 -05:00
public	LIBS optimization for adapter clipping	2013-01-25 16:05:17 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	Added atlassian intellij plugin file to .gitignore	2013-01-23 20:55:28 -07:00
build.xml	Updating Queue maven version to 0.0.2	2013-01-10 13:46:49 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	ReadBackedPileup cleanup	2013-01-11 15:17:18 -05:00