kiran e410c005c0 A debugging tool to ensure the SQ tag in a four-prob SAM file matches the SAMRecord strand orientation. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@368 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-12 19:40:42 +00:00
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gatk	* re-enabled setting of sequence dictionary information on GenomeLoc	2009-04-12 02:44:14 +00:00
playground	A debugging tool to ensure the SQ tag in a four-prob SAM file matches the SAMRecord strand orientation.	2009-04-12 19:40:42 +00:00
utils	* refactored GenomeLoc to use contigIndex internally for performance and fixed several calling classes	2009-04-12 02:25:17 +00:00
StingException.java	We need a base exception so we can differentiate between exceptions we've generated and those external to our code. All our exceptions should extend this exception. I'll migrate the ones I can find later on.	2009-04-07 00:13:45 +00:00