gatk-3.8/public
Mauricio Carneiro c8b1c47764 Updating gsalib for R-3.0 compatibility
* add package namespace that exports all the visible objects
   * list gsalib dependencies in the package requirements

[fixes #49987933]
2013-05-18 12:43:38 -04:00
..
R Updating gsalib for R-3.0 compatibility 2013-05-18 12:43:38 -04:00
c At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings. 2012-01-17 14:47:53 -05:00
chainFiles Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
doc Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs) 2013-03-12 10:57:14 -04:00
java @Output needs to be required for LiftoverVariants to prevent a NPE and documentation needed updating. 2013-05-17 10:04:10 -04:00
keys Public-key authorization scheme to restrict use of NO_ET 2012-03-06 00:09:43 -05:00
packages ValidatingPileup was renamed to CheckPileup 2013-02-15 11:56:19 -05:00
perl Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters) 2012-06-07 16:56:32 -04:00
scala Enable convenient display of diff engine output in Bamboo, plus misc. minor test-related improvements 2013-05-10 19:00:33 -04:00
testdata Revert changes to exampleFASTA.fasta.fai for now to get tests passing again 2013-05-02 12:59:20 -04:00