gatk3的最后一个经典版本3.8

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vruano e3d5d96076 Added the AF indepdent calculator for any ploidy but seems that is not doing a good job for haploid Addresses issue #1078 by implementing a any-ploidy version of the independent-allele-exact-ac-calculator already available for diploids. Notice that this will change result somewhat when dealing with noisy data (low GQs).		2015-11-07 16:17:30 -05:00
licensing	Updated licenses for 2015	2015-08-06 15:23:11 -04:00
protected	Added the AF indepdent calculator for any ploidy but seems that is not doing a good job for haploid	2015-11-07 16:17:30 -05:00
public	Addressing comments	2015-11-04 11:00:01 -05:00
settings/helpTemplates	Numerous doc fixes; mostly formatting and clarifications	2015-05-03 00:28:46 +02:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Using `SamIndexes.asBaiSeekableStreamOrNull()` to support `.cram.crai`.	2015-09-14 12:20:36 -04:00

The Genome Analysis Toolkit