gatk3的最后一个经典版本3.8

Mauricio Carneiro e39a59594a BQSR triage and test routines ... * updated BQSR queue script for faster turnaround * implemented plot generation for scatter/gatherered runs * adjusted output file names to be cooperative with the queue script * added the recalibration report file to the argument table in the report * added ReadCovariates unit test -- guarantees that all the covariates are being generated for every base in the read * added RecalibrationReport unit test -- guarantees the integrity of the delta tables		2012-04-23 11:23:00 -04:00
licensing	Licenses for GATK 1 and 2 beta	2012-04-17 11:40:02 +01:00
public	BQSR triage and test routines	2012-04-23 11:23:00 -04:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	Updated license year	2012-03-27 14:32:02 -04:00
build.xml	Added function to get bases from the current base forward in the window in ReferenceContext	2012-04-06 16:07:46 -04:00
ivy.xml	S3 upload now directly creates the XML report in memory and puts that in S3	2012-01-29 15:14:58 -05:00