Mark DePristo e36994e36b Refactored a FeatureManager class from RMDTrackBuilder ... New class handles (vastly more cleanly) the db of tribble codecs, features, and names for use throughout the GATK. Added SelfScopingFeatureCodec interface that allows a FeatureCodec to examine a file and determine if the file can be parsed. This is the first step towards allowing the GATK to dynamically determine the type of a RodBinding.		2011-08-08 14:04:46 -04:00
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arguments	Updating tools to use the RodBinding<T> syntax	2011-08-02 14:05:51 -04:00
datasources	Continuing progress towards RodBinding 1.0	2011-08-03 17:19:28 -04:00
executive	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
filters	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
iterators	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
refdata	Refactored a FeatureManager class from RMDTrackBuilder	2011-08-08 14:04:46 -04:00
report	GATKReport v0.2:	2011-08-03 00:24:47 -04:00
traversals	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
walkers	Merge branch 'master' into rodRefactor	2011-08-08 10:08:43 -04:00
EngineFeaturesIntegrationTest.java	Continuing progress towards RodBinding 1.0	2011-08-03 17:19:28 -04:00
GenomeAnalysisEngineUnitTest.java	Fixing broken paths to the testdata directory throughout the codebase.	2011-06-29 17:36:47 -04:00
WalkerManagerUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00