Ryan Poplin e3147969d9 Smith Waterman parameters have somehow gotten too diverged from what it is used in the indel realigner. Results are very dependent on these params. Changes to the assembly to not create long haplotypes out of only small pieces that were properly assembled.		2012-06-18 08:51:41 -04:00
..
config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Smith Waterman parameters have somehow gotten too diverged from what it is used in the indel realigner. Results are very dependent on these params. Changes to the assembly to not create long haplotypes out of only small pieces that were properly assembled.	2012-06-18 08:51:41 -04:00
test	Bug fix in VQSR so that the VCF index will be created for the recalFile.	2012-06-08 11:51:28 -04:00