gatk3的最后一个经典版本3.8

Ryan Poplin e3147969d9 Smith Waterman parameters have somehow gotten too diverged from what it is used in the indel realigner. Results are very dependent on these params. Changes to the assembly to not create long haplotypes out of only small pieces that were properly assembled.		2012-06-18 08:51:41 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
protected/java/src/org/broadinstitute/sting	build system overhaul	2012-05-17 15:16:29 -04:00
public	Smith Waterman parameters have somehow gotten too diverged from what it is used in the indel realigner. Results are very dependent on these params. Changes to the assembly to not create long haplotypes out of only small pieces that were properly assembled.	2012-06-18 08:51:41 -04:00
settings	Testing of BCF codec	2012-05-24 10:57:01 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	ant fasttest: for when you just can't wait	2012-06-01 15:17:18 -04:00
ivy.xml	Final updates to integration tests for BCF2	2012-05-24 10:58:59 -04:00