gatk3的最后一个经典版本3.8

Mauricio Carneiro e2d41f0282 Turning @Output required to false ... By default all output is assigned to stdout if a -o is not provided. Technically this makes @Output a not required parameter, and the documentation is misleading because it's reading from the annotation. GSA-820 #resolve		2013-03-05 17:26:16 -05:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Revert push from stable (I forgot that pushing from stable overwrites current unstable changes)	2013-03-05 09:06:02 -05:00
public	Turning @Output required to false	2013-03-05 17:26:16 -05:00
settings	Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample).	2013-02-21 10:14:11 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Ant target to package a GATK jar with private included	2013-03-01 15:33:59 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00