jmaguire e2780c17af Checkin of the Multi-Sample SNP caller. ... Doesn't work yet; same command I used to use now causes GATK to throw an exception. Will check with Matt & Aaron tomorrow, then do a regression test. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1509 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-03 00:23:28 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Checkin of the Multi-Sample SNP caller.	2009-09-03 00:23:28 +00:00
test/org/broadinstitute/sting	Better organization of Genotype likelihood calculations. NewHotness is now just GenotypeLikelihoods. There are 1, 3, and empirical base error models available as subclasses, along with a simple way to make this (see the factory).	2009-08-30 19:16:30 +00:00