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gatk3的最后一个经典版本3.8
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Java 95.8%
Scala 3.8%
R 0.2%
JavaScript 0.1%
 
 
 
 
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jmaguire e2780c17af Checkin of the Multi-Sample SNP caller. 
Doesn't work yet; same command I used to use now causes GATK to throw an exception.

Will check with Matt & Aaron tomorrow, then do a regression test.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1509 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-09-03 00:23:28 +00:00
R Updated python files 2009-07-07 14:15:39 +00:00
c Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
doc moved to wiki 2009-07-22 16:35:23 +00:00
java Checkin of the Multi-Sample SNP caller. 2009-09-03 00:23:28 +00:00
packages Added VariantFiltrationWalker to GATK early release. 2009-09-02 02:17:50 +00:00
perl A useful perl module for quick argument parsing. 2009-08-31 15:44:57 +00:00
python Give usage message if no arguments provided. 2009-08-31 00:28:43 +00:00
scala/src support for scala walkers 2009-08-28 00:15:01 +00:00
settings Switched to Reflections (http://code.google.com/p/reflections/) project for 2009-07-21 18:32:22 +00:00
shell Version 0.2.1 (released) of the TableRecalibrator 2009-06-25 22:50:55 +00:00
testdata 2009_02 release is no longer with us. Update the bam list. 2009-08-11 12:49:23 +00:00
build.xml Nicer building of scala programs 2009-08-29 16:41:56 +00:00
ivy.xml Switched to Reflections (http://code.google.com/p/reflections/) project for 2009-07-21 18:32:22 +00:00