Mark DePristo e262f4e10b gatkdoc now generalized to use @Annotation. Multiple subsystems now use annotation to receive docs ... Index expanded to use summary() annotation field UserExceptions, ReadFilters, GATK engine all use the system to generate docs Doclet expanded to handle lots of new cases		2011-07-23 20:00:35 -04:00
..
R	Moving AnalyzeAnnotations into the archive because it has outlived its usefulness.	2011-07-02 10:39:53 -04:00
c	BWA bindings and tests moved to public (was required for ValidationAmplicons)	2011-07-19 20:11:31 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	gatkdoc now generalized to use @Annotation. Multiple subsystems now use annotation to receive docs	2011-07-23 20:00:35 -04:00
packages	Revert "Merge branch 'master' of ssh://gsa1/humgen/gsa-scr1/gsa-engineering/git/unstable"	2011-07-19 18:38:53 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Revert "Merge branch 'master' of ssh://gsa1/humgen/gsa-scr1/gsa-engineering/git/unstable"	2011-07-19 18:38:53 -04:00
testdata	Testdata for diffObjects.	2011-07-18 10:47:03 -04:00