Mauricio Carneiro e1d69e4060 make the size of a GenomeLoc int instead of long ... it will never be bigger than an int and it's actually useful to be an int so we can use it as parameters to array/list/hash size creation.		2012-02-03 17:12:42 -05:00
..
R	queueJobReport now compresses PDF when running R 2.13+.	2012-01-10 17:32:30 -05:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	make the size of a GenomeLoc int instead of long	2012-02-03 17:12:42 -05:00
packages	Revved Picard to incorporate tfennell's AsyncSAMFileWriter.	2011-12-06 10:37:42 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Small script to chunk up a VCF into equal-sized chunks	2012-02-02 12:29:03 -05:00
testdata	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00