Louis Bergelson e1c41b2c38 Updated gatk so it compiles on java 8 ... updated cofoja to 1.2 from 1.0 added explicit type casts in places that java 8 required them		2015-06-26 15:59:46 -04:00
..
engine/recalibration	Split all imports of tools|engine from utils, and all tools from engine.	2014-10-24 20:59:46 +08:00
tools/walkers	Updated gatk so it compiles on java 8	2015-06-26 15:59:46 -04:00
utils	Rev htsjdk to version 1.132 and picard to version 1.131, and switch to using the versions in maven central	2015-05-14 15:26:23 -04:00