Mark DePristo ac5e58a265 Bugfix for GSA-540 / Update metadata maps when adding lines to VCFHeader ... -- https://jira.broadinstitute.org/browse/GSA-540 -- http://gatkforums.broadinstitute.org/discussion/1433/possible-bug-and-fix-in-java-code-of-vcfheader-org-broadinstitute-sting-utils-codecs-vcf-vcfheader		2012-10-26 16:34:16 -04:00
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bcf2	Print "Parsing data stream with BCF version BCFx.y" in BCF2 codec as .debug not .info	2012-08-19 10:32:55 -04:00
beagle	a) Document BEAGLE codec, b) Bug fix: inbreeding coefficient shouldn't be computed for non-diploid organisms in current implementaiton	2012-07-24 12:16:15 -04:00
hapmap	Fix RawHapMapCodec so that it can build indexes. Minor fixes to VCF codec.	2012-10-21 01:29:59 -04:00
refseq	Rev Tribble to r97, adding binary feature support	2012-05-03 07:31:48 -04:00
sampileup	Rev Tribble to r97, adding binary feature support	2012-05-03 07:31:48 -04:00
samread	Rev Tribble to r97, adding binary feature support	2012-05-03 07:31:48 -04:00
table	Rev Tribble to r97, adding binary feature support	2012-05-03 07:31:48 -04:00
vcf	Bugfix for GSA-540 / Update metadata maps when adding lines to VCFHeader	2012-10-26 16:34:16 -04:00