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gatk3的最后一个经典版本3.8
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Java 95.8%
Scala 3.8%
R 0.2%
JavaScript 0.1%
 
 
 
 
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Eric Banks e199562c25 I have pulled out all of the documentation URLs and put them into the HelpUtils class as static variables; this way, Appistry can change links as needed to point commercial users to their own internal forum without having to muck things up all over our source. Added some TODOs for Geraldine to update links in the GATK docs that still point to the old wiki. Sorry that I am pushing into stable, but that's what Appistry is pulling from for their release next week (and unstable has been failing forever). 2012-11-27 10:26:17 -05:00
licensing Final final final version of the license. 2012-07-20 18:00:02 -04:00
protected/java Soft clipped bases shouldn't be counted in the delocalized BQSR. 2012-11-25 21:55:29 -05:00
public I have pulled out all of the documentation URLs and put them into the HelpUtils class as static variables; this way, Appistry can change links as needed to point commercial users to their own internal forum without having to muck things up all over our source. Added some TODOs for Geraldine to update links in the GATK docs that still point to the old wiki. Sorry that I am pushing into stable, but that's what Appistry is pulling from for their release next week (and unstable has been failing forever). 2012-11-27 10:26:17 -05:00
settings Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component. 2012-10-16 02:22:30 -04:00
.gitignore adding some directories to gitignore 2012-09-27 11:09:41 -04:00
build.xml Refuse to package the GATK from a non-clean working directory 2012-11-02 19:11:24 -04:00
intellij_example.tar.bz2 Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!) 2012-09-27 11:04:56 -04:00
ivy.xml Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component. 2012-10-16 02:22:30 -04:00