Mark DePristo 4f09453470 Refactored reduced read utilities ... -- UnitTests for key functions on reduced reads -- PileupElement calls static functions in ReadUtils -- Simple routine that takes a reduced read and fills in its quals with its reduced qual		2011-09-26 12:58:31 -04:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Refactored reduced read utilities	2011-09-26 12:58:31 -04:00