gatk3的最后一个经典版本3.8

Guillermo del Angel e185632013 Exhaustive unit tests for Pool SNP genotype likelihoods: ... a) Add ability for ErrorModel to be specified by external log-probability vector for testing. b) For a given depth and ploidy(=2*samples/pool), create artificial high quality pileup testing from AC=0 to AC=ploidy, and test that pool GL's have expected content.Misc. refactorings and cleanups c) Misc. cleanups and beautification.		2012-04-30 14:29:46 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
public	Exhaustive unit tests for Pool SNP genotype likelihoods:	2012-04-30 14:29:46 -04:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Added function to get bases from the current base forward in the window in ReferenceContext	2012-04-06 16:07:46 -04:00
ivy.xml	S3 upload now directly creates the XML report in memory and puts that in S3	2012-01-29 15:14:58 -05:00