gatk3的最后一个经典版本3.8

Go to file

Ryan Poplin e14bff212d SB tables should be created even if the ref or alt columns have no counts. This is so that FS/SOR will still be calculated when the variant is extremely high or low frequency. -- Removed long running HC integration test... sorry		2014-06-30 15:19:15 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	SB tables should be created even if the ref or alt columns have no counts. This is so that FS/SOR will still be calculated when the variant is extremely high or low frequency.	2014-06-30 15:19:15 -04:00
public	Reads are now realigned to the most likely haplotype before being used by the annotations.	2014-06-30 10:35:50 -04:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Fixed minor pom.xml line that was out of place after sortpom.	2014-06-26 01:01:19 +08:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/