gatk3的最后一个经典版本3.8

Mark DePristo e1293f0ef2 GSA-507: Thread monitoring refactored so it can work without a thread factory ... -- Old version StateMonitoringThreadFactory refactored into base class ThreadEfficiencyMonitor and subclass EfficiencyMonitoringThreadFactory. -- Base class is used by LinearMicroScheduler to monitor performance of GATK in single threaded mode -- MicroScheduler now handles management of the efficiency monitor. Includes master thread in monitor, meaning that reduce is now included for both schedulers		2012-08-22 16:48:01 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Merged bug fix from Stable into Unstable	2012-08-22 14:40:34 -04:00
public	GSA-507: Thread monitoring refactored so it can work without a thread factory	2012-08-22 16:48:01 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Convert external.build.dir and external.dist.dir back to paths	2012-08-15 23:04:10 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00