gatk3的最后一个经典版本3.8

David Roazen e0c8c0ddcb Modified VariantEval FunctionalClass stratification to remove hardcoded GenomicAnnotator keynames ... This is a temporary and hopefully short-lived solution. I've modified the FunctionalClass stratification to stratify by effect impact as defined by SnpEff annotations (high, moderate, and low impact) rather than by the silent/missense/nonsense categories. If we want to bring back the silent/missense/nonsense stratification, we should probably take the approach of asking the SnpEff author to add it as a feature to SnpEff rather than coding it ourselves, since the whole point of moving to SnpEff was to outsource genomic annotation.		2011-09-14 07:09:47 -04:00
public	Modified VariantEval FunctionalClass stratification to remove hardcoded GenomicAnnotator keynames	2011-09-14 07:09:47 -04:00
settings	Revving the Tribble jar where the DbsnpCodec class was renamed to OldDbsnpCodec. Updating GATK code accordingly.	2011-09-06 20:39:42 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Fix nasty bug involving the build report generation when multiple test targets are specified on the same command line.	2011-09-09 12:13:10 -04:00
ivy.xml	The tribble dependency is now handled through ivy. Revved tribble to r18 and removed obsolete build targets in build.xml	2011-08-11 16:38:29 -04:00