David Roazen e077347cc2 Re-allow running the GATK with experimental downsampling ... It's now possible to run with experimental downsampling enabled using the --enable_experimental_downsampling engine argument. This is scheduled to become the GATK-wide default next week after diff engine output for failing tests has been examined.		2012-09-21 23:20:46 -04:00
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R	Fix a nasty bug in reading GATK reports with a single line	2012-09-10 20:14:13 -04:00
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java	Re-allow running the GATK with experimental downsampling	2012-09-21 23:20:46 -04:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
perl	Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters)	2012-06-07 16:56:32 -04:00
scala	Update from dbsnp135 to dbsnp137.	2012-08-31 14:06:29 -04:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00