hanna 118071cfd8 Proof-of-concept perfect read aligner, implemented as described in sec 2.4 of BWA paper. Has successfully aligned a handful of reads. Requires significant cleanup and refactoring. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1617 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-14 21:54:56 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Proof-of-concept perfect read aligner, implemented as described in sec 2.4 of BWA paper. Has successfully aligned a handful of reads. Requires significant cleanup and refactoring.	2009-09-14 21:54:56 +00:00
test/org/broadinstitute/sting	Changes to switch Variant Eval over to the new Variation system.	2009-09-14 05:34:33 +00:00