gatk-3.8/public/testdata
Mauricio Carneiro ed91461c49 Data Processing Pipeline Test
* Added standard pipeline test for the DPP
* Added a full BWA pipeline test for the DPP
* Included the extra files for the reference needed by BWA (to be used by DPP and PPP tests)
2011-12-12 00:24:51 -05:00
..
vcf
HiSeq.10000.bgzip.vcf.gz
HiSeq.10000.vcf
HiSeq.10000.vcf.gz
TabularDataTest.dat
TabularDataTest2.dat
ValidatingPileupTargets.list
ceutrio.ped
defaultGATKConfig.cfg
diffTestMaster.vcf
diffTestTest.vcf
exampleBAM.bam PPP pipeline test 2011-12-11 17:32:21 -05:00
exampleBAM.bam.bai PPP pipeline test 2011-12-11 17:32:21 -05:00
exampleBAM.simple.bai
exampleBAM.simple.bam
exampleDBSNP.vcf PPP pipeline test 2011-12-11 17:32:21 -05:00
exampleFASTA.dict
exampleFASTA.fasta
exampleFASTA.fasta.amb Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.ann Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.bwt Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.fai
exampleFASTA.fasta.pac Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.rbwt Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.rpac Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.rsa Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.sa Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleNORG.bam
exampleNORG.bam.bai
gFFTest.gff
genotypes_chr1_ASW_phase3.3_first500.hapmap
logisticParamsTest.list
overlapTest.bed Testdata for IntervalStratification 2011-11-10 11:08:34 -05:00
recalConfig_1KG.cfg
sampleBedFile.bed
small.dbsnp.rod
tranches.4.txt
tranches.6.txt
tranches.raw.dat
withSymbolic.b37.vcf Testdata for IntervalStratification 2011-11-10 11:08:34 -05:00